Package: ocrRBBR 0.1.0

Seyed Amir Malekpour

ocrRBBR: Explain Gene Expression with Boolean Rules of Chromatin States

Infers Boolean rules among cis-regulatory regions using paired chromatin accessibility and gene expression data at bulk and single-cell levels. Links regulatory regions to target genes, providing insights into gene regulation mechanisms.

Authors:Seyed Amir Malekpour [aut, cre]

ocrRBBR_0.1.0.tar.gz
ocrRBBR_0.1.0.zip(r-4.7-any)ocrRBBR_0.1.0.zip(r-4.6-any)ocrRBBR_0.1.0.zip(r-4.5-any)
ocrRBBR_0.1.0.tgz(r-4.6-any)ocrRBBR_0.1.0.tgz(r-4.5-any)
ocrRBBR_0.1.0.tar.gz(r-4.7-any)ocrRBBR_0.1.0.tar.gz(r-4.6-any)
ocrRBBR_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ocrRBBR/json (API)

# Install 'ocrRBBR' in R:
install.packages('ocrRBBR', repos = c('https://compbioipm.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/compbioipm/ocrrbbr/issues

On CRAN:

Conda:

3.18 score 254 downloads 4 exports 64 dependencies

Last updated from:a90a92f462. Checks:2 ERROR, 7 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develERROR135
source / vignettesOK235
linux-releaseERROR147
macos-releaseOK153
macos-oldrelOK191
windows-develOK92
windows-releaseOK116
windows-oldrelOK111
wasm-releaseOK128

Exports:ESSlink_peaks_to_tssocrRBBR_bulkocrRBBR_single_cell

Dependencies:askpassBHBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitopscigarilloclicodetoolscpp11crayoncurldoParalleldplyrforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicRangesglmnetgluehttrIRangesiteratorsjsonlitelambda.rlatticelifecyclemagrittrMatrixmimeopensslpillarpkgconfigR6RcppRcppEigenRCurlrestfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4VectorsSeqinfoshapesnowsurvivalsystibbletidyselectUCSC.utilsutf8vctrswithrXMLXVectoryaml