Package: ocrRBBR 0.1.0

Seyed Amir Malekpour

ocrRBBR: Explain Gene Expression with Boolean Rules of Chromatin States

Infers Boolean rules among cis-regulatory regions using paired chromatin accessibility and gene expression data at bulk and single-cell levels. Links regulatory regions to target genes, providing insights into gene regulation mechanisms.

Authors:Seyed Amir Malekpour [aut, cre]

ocrRBBR_0.1.0.tar.gz
ocrRBBR_0.1.0.zip(r-4.7)ocrRBBR_0.1.0.zip(r-4.6)ocrRBBR_0.1.0.zip(r-4.5)
ocrRBBR_0.1.0.tgz(r-4.6-any)ocrRBBR_0.1.0.tgz(r-4.5-any)
ocrRBBR_0.1.0.tar.gz(r-4.7-any)ocrRBBR_0.1.0.tar.gz(r-4.6-any)
ocrRBBR_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ocrRBBR/json (API)
NEWS

# Install 'ocrRBBR' in R:
install.packages('ocrRBBR', repos = c('https://compbioipm.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/compbioipm/ocrrbbr/issues

On CRAN:

Conda:

3.18 score 134 downloads 4 exports 72 dependencies

Last updated from:a90a92f462. Checks:2 ERROR, 7 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR170
source / vignettesOK221
linux-release-x86_64ERROR157
macos-release-arm64OK161
macos-oldrel-arm64OK178
windows-develOK133
windows-releaseOK111
windows-oldrelOK121
wasm-releaseOK138

Exports:ESSlink_peaks_to_tssocrRBBR_bulkocrRBBR_single_cell

Dependencies:abindaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitopscigarilloclicodetoolscpp11crayoncurlDelayedArraydoParalleldplyrforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicRangesglmnetgluehttrIRangesiteratorsjsonlitelambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigR6RcppRcppEigenRCurlrestfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsSeqinfoshapesnowSparseArraySummarizedExperimentsurvivalsystibbletidyselectUCSC.utilsutf8vctrswithrXMLXVectoryaml